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Curriculum Vitae

Tony Sumaryada, Ph.D

Position :      Lecturer and Researcher

Office :         Department of Physics Bogor Agricultural University (IPB)

Jalan Meranti, Kampus IPB Darmaga, Bogo,r Indonesia, 16680

Phone : +62-251-8625728

Email :

Education

(2003 – 2007)  Florida State University (FSU), Tallahassee FL

Ph.D  and M.S in Theoretical Nuclear Physics

Dissertation: “Pairing Correlations and Phase Transitions in Mesoscopic Systems”.

Advisor :  Prof. Alexander Volya

Research Interest

Computational Physics and Modelling, including :

  1. Nuclear Structure and pairing phase transition
  2. Solar Cell Modelling (Modelling multijunction solar cells)
  3. Molecular Dynamic Simulations and Rational Drug Design (Molecular Docking)
  4. Aerodynamics (Computational Fluid Dynamics)

Research Affiliation

  1. Theoretical Physics Division, Department of Physics Bogor Agricultural University
  2. Computational Biophysics and Molecular Modeling Research Group (CBMoRG) at Department of Physics IPB
  3. Tropical Biopharmaca Research Center, Bogor Agricultural University

Professional Experience / Employment History

1. Lecturer of Physics (Docent) at Department of Physics, Bogor Agricultural University (IPB), Bogor,        Indonesia. (1997-Now).

2. Certificate holder for Content and Language Integrated Learning (CLIL) from Cambridge Assesment English (2017).

3. ISO 9001: 2015 Academic Sevice Internal Auditor  (2017)

4.  USAID Physics Consultant for STEM Program at IPB (2013 and 2014)

5.   Visiting Assistant Professor / Lecturer of Physics at Department of Physics and Engineering, Frostburg State University, Frostburg MD 21532.

6. Temporary Assistant Professor at Department of Chemistry and Physics, Armstrong Atlantic State University, Savannah GA 31419.

7.  Adjunct Assistant Professor / Instructor at Department of Physics Florida State University, Tallahassee FL

8. Teaching and Research Assistant at Department of Physics, Florida State University

9. Research Assistant at Institute of Molecular Biophysics, Florida State University

Teaching Experiences

As a Visiting Assistant Professor / Lecturer of Physics at Frostburg State University

  1. PHYS 263 Physics of Light and Sound, Calculus based Introductory Physics using a Studio Physics approach
  2. PHYS 261 Mechanics, Calculus based Introductory Physics using a Studio Physics approach
  3. PHYS 350 / 490 Practical Solar Energy
  4. ENES 100 Engineering Design
  5. PHYS 436 Mathematical Physics
  6. PHYS 216 General Physics II
  7. PHYS 215Lab General Physics I

As a Temporary Assistant Professor of Physics at Armstrong Atlantic State University

  1. PHYS 1111 and PHYS 1112 Introductory Physics 1 and 2 (Trigonometry/Algebra  based physics in studio format), Armstrong Atlantic State University
  2. ISCI 2002 Physical Science for Early Childhood Educators
  3. PHYS 2054C, Introductory Physics II (algebra based physics in regular format), Florida State University .As an Adjunct Instructor / Professor.

As an Adjunct Assistant Professor / Instructor and Graduate Teaching Assistant at Florida State University

  1. AST 1020L (Astronomy lab)  FSU.  Teaching Assistant
  2. PHY 2053 Lab, PHY 2054 Lab (algebra based), and PHY 2048 Lab, PHY2049 Lab (calculus based), FSU. Teaching Assistant
  3. Grader for some courses in FSU :

(a)  Phase Transitions and Critical Phenomena

(b)  Special and General Relativity.

(c)  Mathematical Physics.

As a Lecturer at Bogor Agricultural University (IPB) in Indonesia

1. Calculus based Physics 1 and 2, Nuclear Physics, Statistical Physics, Molecular Biophysics,

2.  Mathematical Physics 1 (2011 – now)

3. General physics (algebra based), Fundamental physics (calculus based), Basic Electronics (Course and lab), Introduction to Modern Physics, Introduction to Superconductivity, BAU 1997-2002

Publication

International Journal (scopus indexed) 

1. Quantum anharmonic oscillator plus delta-function potential: a molecular view of pairing formation and breaking in the coordinate space, T Sumaryada, BM Putra, S Pramudito, European Journal of Physics 38 (3), 035401. https://doi.org/10.1088/1361-6404/aa5e0e

2. Molecular Docking And Pharmacokinetic Prediction Of Herbal Derivatives As Maltase-Glucoamylase Inhibitor, PJ Ochieng, T Sumaryada, D Okun – Asian J Pharm Clin Res, 2017. http://dx.doi.org/10.22159/ajpcr.2017.v10i9.19337

3. Husin Alatas, Tony I Sumaryada, Faozan Ahmad, Characteristics of local density of optical states in a tapered grated waveguide at resonant states,Optik-International Journal of Light and electron optics, Vol 27 Issue 5, 2016. https://doi.org/10.1016/j.ijleo.2015.11.202

4.  T. Sumaryada, A.Volya, Thermodynamics of pairing in mesoscopic system, Phys.Rev.C76, 024319, 2007. https://doi.org/10.1103/PhysRevC.76.024319

Scopus indexed Proceeding

1. Modeling the Thermal Response of Al0.3Ga0.7As/GaAs/Ge Multijunction Solar Cells, T Sumaryada, NE Damayanti, S Rohaeni, H Syafutra, Irzaman, A Maddu, …, Journal of Physics: Conference Series 877 (2017), 0120301-5. https://doi.org/10.1088/1742-6596/877/1/012030

2. Conformation Analysis of T1 Lipase on Alcohols Solvent using Molecular Dynamics Simulation, AM Putri, T Sumaryada, ST Wahyudi, Journal of Physics: Conference Series 877 (2017), 0120071-8.

https://doi.org/10.1088/1742-6596/877/1/012007

3. Simulating the classical and relativistic equation of state of the stars upon variation of the electron to baryon ratio, T Sumaryada, E Mattanzi, A Kartono, AIP Conference Proceedings 1862 (1), 030010.  https://doi.org/10.1063/1.4991114

4. Molecular docking simulation of mangostin derivatives and curcuminoid on maltase-glucoamylase target for searching anti-diabetes drug candidates, T Sumaryada, AW Roslia, L Ambarsari, A Kartono, Biomedical Engineering (IBIOMED), International Conference on, 1-4, IEEExplore.  https://doi.org/10.1109/IBIOMED.2016.7869832

5. Giant halos in medium nuclei within modified relativistic mean field (MRMF) model, AM Nugraha, A Sulaksono, T Sumaryada, AIP Conference Proceedings 1729 (1), 020008,  https://doi.org/10.1063/1.4991114

6. Molecular Docking Studies of Catechin and Its Derivatives as Anti-bacterial Inhibitor for Glucosamine-6-Phosphate Synthase, H Fikrika, L Ambarsari, T Sumaryada, IOP Conference Series: Earth and Environmental Science 31 (1), 012009. https://doi.org/10.1088/1755-1315/31/1/012009

7. Elucidation of GB1 Protein Unfolding Mechanism via a Long-timescale Molecular Dynamics Simulation, T Sumaryada, J Hati, ST Wahyudi, ND Malau, KN Sawitri, IOP Conference Series: Earth and Environmental Science 31 (1), 012008. https://doi.org/10.1088/1755-1315/31/1/012008

8. High Temperature Unfolding and Low Temperature Refolding Pathway of Chymotrypsin Inhibitor 2 Using Molecular Dynamics Simulation, ND Malau, T Sumaryada, IOP Conference Series: Earth and Environmental Science 31 (1), 012010. https://doi.org/10.1088/1755-1315/31/1/012010

9. Sidikrubadi Pramudito, Nugraha Wanda Sanjaya, Tony Sumaryada, Numerical Solutions of Anharmonic Vibration of BaO and SrO Molecules, AIP Conference Proceeding, The 4th International Conference in Theoretical and Applied Physics, Denpasar-Bali Oct 2014. https://doi.org/10.1063/1.4943703

10. T. Sumaryada, E.S. Wahyuni, H. Syafutra, H. Alatas, The effect of spectrum range limitation to the efficiency of Al0.3Ga0.7As/GaAs/InP/Ge multijunction solar cells : A simulation case, Proc.of SPIE Vol. 9444  94440M-1, International Seminar on Photonics, Optics, and Its Applications (ISPhOA 2014), Sanur-Bali Oct 2014. http://dx.doi.org/10.1117/12.2078069

11. Husin Alatas, Tony I. Sumaryada, Faozan Ahmad, Local Density of Optical States of an Asymmetric Waveguide Grating at Photonic Band Gap Resonant Wavelength, Proc. of SPIE Vol. 9444  944414-1, International Seminar on Photonics, Optics, and Its Applications (ISPhOA 2014), Sanur-Bali Oct 2014.

12. T. Sumaryada, R. Sobirin, H. Syafutra, Ideal Simulation of Al0.3Ga0.7As/InP/Ge multijunction solar cells, Padjajaran International Physics Conference, 7-9 May 2013, AIP Conference Proceedings Vol 1554, Melville New York 2013, pp 162-165. https://doi.org/10.1063/1.4820310

 

Others

1.Study of Modified Oral Minimal Model using n-Order Decay Rate of Plasma Insulin for the Oral Glucose Tolerance Test in Subjects with Normal, Impaired and Diabetic Glucose Tolerance, A Kartono, ES Putri, AA Setiawan, H Syafutra, T Sumaryada, American Journal of Applied Sciences 2017, 14 (4): 426.435 DOI: 10.3844/ajassp.2017.426.435

2. Optimization of Insulin Sensitivity and Glucose Effectiveness Index from an Oral Glucose Tolerance Test Using Modified Oral Minimal Model and Gravitational Search Algorithm, A Kartono, G Pratiwi, AA Setiawan, ST Wahyudi, T Sumaryada, Applied Mathematical Sciences 11 (9), 433-443. https://doi.org/10.12988/ams.2017.7119

3.Deciphering The Action Mechanism Of Indonesia Herbal Decoction In TheTreatment Of Type II Diabetes Using A Network Pharmacology Approach, Peter JumaOchieng, WisnuAnantaKusuma, MohamadRafi,TonySumaryada, International Journal of Pharmacy and Pharmaceutical Sciences Vol 9, Issue 3, 2017. DOI : http://dx.doi.org/10.22159/ijpps.2017v9i3.16413

4The Effects Of Physical Exercise On The Insulin-Dependent Diabetes Mellitus Subjects Using The Modified Minimal Model, AgusKartono, FebriDwiIrawati, ArdianArifSetiawan, HeriyantoSyafutra, Tony Sumaryada, International Journl of Pharmacy and Pharmaceuticals Sciences, Vol 9, Issue 2, 2017. http://dx.doi.org/10.22159/ijpps.2017v9i2.15621

5. T. Setiawan, L Ambarsari, T Sumaryada, Anticancer Study of Wonogiri’s Curcuma Xanthorhizaroxb Ethanol Fraction as Jamu by Flexible Docking Methods, International Journal of Hybrid Information Technology Vol 10 no 1 2017 (pp 277-288).

6. T Setiawan, L Ambarsari, TI Sumaryada, Studi In Silico Converse Region Etoposite Binding Domain PadaIsozim Human Dna Topoisomerase II, CAKRA KIMIA (Indonesian E-Journal of Applied Chemistry) 4 (1), 61-70.

7. Molecular Interaction Analysis of COX-2 against Curcuminoid and Xanthorizol Ligand as Anti Breast Cancer using Molecular Docking, R Pratama, L Ambarsari, TI Sumaryada, Current Biochemistry 2 (3), 139-149

8. T. Sumaryada, Pengembangan Matakuliah Fisika Dasar 2 di IPB Menggunakan Format Semi Fisika Studio, Prosiding Seminar dan Rapat Tahunan MIPA (Semirata) 2014, Bogor, hal 408-418

9. Arwansyah, L. Ambarsari, T. Sumaryada, Simulasi Docking Senyawa Kurkumin dan Analognya Sebagai Inhibitor Reseptor Androgen pada Kanker Prostat, Current Biochemistry, Vol 1 (1) : 14-24, ISSN : 2355-7877, 2014.

10. G. Syahputra, L. Ambarsari, T. Sumaryada, DockingSimulation of  Curcumin and Its Analogs as Inhibitors on 12-Lipoxygenase Enzymes, Jurnal Biofisika,  Vol 10(1) pp 48-58

11.  K. N. Sawitri, S.T. Wahyudi, T. Sumaryada, Analisa Pasangan Jembatan Garam Residu Glu15-Lys4 Pada Kestabilan Termal Protein 1GB1, Jurnal Biofisika,  Vol 10(1) pp 59-64

12.  T. Sumaryada, E.S. Wahyuni, H. Syafutra, R. Sobirin, Pengaruh Pembatasan Daerah Penyerapan Spektrum Radiasi Benda Hitam dari Matahari pada Simulasi Sel Surya 4-junction Al0.3Ga0.7As/GaAs/InP/Ge, Indonesian Journal of Physics (in press), 2014.

13. T.Sumaryada, M.Saputra, A.M. Nugraha, H. Syafutra, Optimization of Pairing Matrices Potentials using PSO Algorithm, Proceeding of 1st Diponegoro Physics Conference, 9 Nov 2013, ISBN  978-602-18940-1-9

14. T. Sumaryada, H. Syafutra, R.Sobirin, A.W.Roslia, Simulasi Awal Perancangan Sel Surya Double Junction GaAs/Ge, Prosiding Seminar Nasional Sains ke V, 10 Nov 2012, ISBN 978-979-95093-8-3, hal 393-403.

15. A.W. Roslia, T. Sumaryada, Pengaruh Surface Texturing Germanium dan Silikon pada Disain Sel Surya menggunakan program PC1D, Prosiding Seminar Nasional Sains ke V, 10 Nov 2012, ISBN 978-979-95093-8-3, hal 404-413.

Abstract in International Reputable Conferences

1. T. Sumaryada, A. Volya, The effect of magnetic field to the pairing phase transition of mesoscopic system, Bulletin of APS, DNP meeting, October 2007, Vol 52, No.6

2. T. Sumaryada, A. Volya, Thermalization and Entropy in Nuclear Pairing Phase Transition, Bulletin of APS April Meeting 2007, Vol 52, No.3,   page 158.

3. T. Sumaryada, A. Volya, Thermodynamics of Pairing in the Mesoscopic Nuclear System, Bulletin of APS, DNP meeting, October 2006, Vol 51, No.6, page 938.

4. V. Zelevinsky, T. Sumaryada, A. Volya, Possible Collective effect of Residual Three Body Forces, Bulletin of APS April Meeting 2006,Vol. 51, No.3.

5. Effect of  Topological links on the folding and stability of Microcyn J25, 48th Annual Meeting of American Biophysical Society, Feb 2004, Baltimore  Maryland. Biophysics Journal, 2004 January; 86 (Suppl 1 Pt 2): 496a.

Conferences Attended

  1. Seminar dan Rapat Tahunan MIPA BKS-PTN Barat, 9-11 Mei 2014, Bogor, Indonesia.
  2. International Seminar on Sciences, 16 Nov 2013, IICC Bogor, Indonesia
  3. 1st Diponegoro Physics Conferences, 09 Nov 2013, Semarang, Indonesia
  4. The 5th Nanoscience and Nanotechnology Symposium, (International Seminar), 23-25 Oct 2013, Surabaya, Indonesia
  5. The 3rd International Conferences on Theoretical and Applied Physics, 12 Oct 2013, Malang, Indonesia
  6. The XXVIth National Physics Symposium, 11 Oct 2013, Malang, Indonesia
  7. The 5th International Symposium on Nano and Supramolecular Chemistry, 23-25 Aug 2013, Yogyakarta, Indonesia
  8. Conference on Theoretical Physics and Nonlinear Phenomena, 25 Sept 2013, Kampus IPB Dramaga Bogor, Indonesia.
  9. Simposium Nasional Inovasi Pembelajaran dan Sains (SNIPS) 2013, 3-4 July 2013, ITB, Bandung, Indonesia.
  10. Seminar Nasional Sains ke V, 10 November 2012, Kampus IPB Dramaga Bogor, Indonesia
  11. Seminar Nasional Sains ke IV, 12 November 2011, Kampus IPB Dramaga Bogor, Indonesia
  12. Sustainable Energy Conferences  at DeSales University,  PA,  June 30th – July 1st   2011.
  13. Sustainable Energy Conferences at Lehigh University, Bethlehem PA, July 14th – 16th  2010.
  14. Ohio Section of American Physical Society (OSAPS), at Kettering University, Flint, MI, April 30th – May 1st  2010.
  15. Division of Nuclear Physics, APS Meeting, Newport News,  VA, Oct 10th -13th , 2007
  16. American Physical Society (APS) April Meeting, Jacksonville FL, April14th -17th,  2007
  17. Division of Nuclear Physics, APS Meeting, Nashville TN, Oct 2006
  18. American Physical Society (APS) April Meeting, Tampa FL, April 16th -19th, 2005

Workshop and Summer School Attended

  1. FabLab Workshop, School Action in Innovation of Science (SAInS) Project funded by USAID, January 07th – 09th 2014
  1. Wind Energy Boot Camps, at DeSales University, PA, June 27th – 29th , 2011,
  2.  Solar Photovoltaics Boot Camps, at Lehigh University, Bethlehem PA,  July 12th – 14th  2010.
  1. New Physics and Astronomy Faculty Workshop, College Park MD, June 28th–  July 1st 2010.
  1. Grant Training Workshop, Frostburg State University and Grant Training Center, Jan 20th  – 22nd ,  2010
  1. The 19thNational Nuclear Physics Summer School, at Florida State University, July 8th – 21st , 2007
  1.  17thNational Nuclear Physics Summer School,  at University of California Berkeley, June 6th -17th , 2005

Talk / Seminar

  1. Molecular Dynamics Simulation and Folding/Unfolding Process of Protein, Invited Open Lectures at Department of Physics, University of Indonesia, Depok March 11th 2015.
  2. Solutions of Harmonic Oscillator with A Gaussian-type Pairing Potential By Perturbation and Numerov Methods, Presented at The 5th International Conference on Mathematics and natural Sciences, ITB Bandung, Nov 2nd 2014.
  3. The effect of spectrum range limitation to the efficiency of Al0.3Ga0.7As/GaAs/InP/Ge multijunction solar cells : A simulation case, International Seminar on Photonics, Optics, and Its Applications (ISPhOA 2014), Sanur-Bali Oct 2014.
  4. Numerical Solutions of Anharmonic Vibration of BaO and SrO Molecules, The 4th      International Conference in Theoretical and Applied Physics, Denpasar-Bali Oct 2014.
  5. Pengembangan Matakuliah Fisika Dasar 2 di IPB Menggunakan Format Semi Fisika Studio, Seminar dan Rapat Tahunan (SEMIRATA) Bidang MIPA BKS-PTN-Barat, Mei 2014, Bogor.
  6.  Rational Drug Design Innitiative in Biopharmaca Research Center at Bogor Agricultural University, an invited talk at International Seminar on Sciences, Nov 16th 2013, IICC Bogor, Indonesia.
  7. Optimization of Pairing Matrices Potentials using PSO Algorithm, talk at 1st Diponegoro Physics Conference, 09 Nov 2013, Semarang, Indonesia.
  8. Exploring the Atomic and Molecular World, talk at Physics Expo 2013 held by HIMAFI IPB (Physics Student Society of IPB), 20 Oct 2013, Bogor
  9. Simulation Techniques on Biomolecules, talk at 2nd Workshop on Molecular Dynamics Simulation at Kampus IPB Dramaga, Bogor, 28 Sept 2013.
  10. Physics at Mesoscopic Scale, an invited talk at Conference on Theoretical Physics and Nonlinear Phenomena, 25 Sept 2013, Kampus IPB Dramaga Bogor, Indonesia
  11. Docking Simulations of Curcumin and Its Analogs As Selective Androgen Receptor Modulators (SARMs) on Prostate cancer Cells, talk at The 5th International Symposium on Nano and Supramolecular Chemistry, 23-25 Aug 2013, Yogyakarta, Indonesia
  12. Physics of Organic Molecules, an invited lecture at School on Particle Physics and Complex Systems, 24 Sept 2013, Kampus IPB Dramaga Bogor, Indonesia
  13. The development of Calculus based Physics 2 using Semi Studio Physics Format, Seminar Nasional Inovasi Pembelajaran dan Sains (SNIPS), 3-4 July 2013, Bandung, Indonesia.
  14. Be More Heroic with Renewable Energy and Sustainability, talk at Physics Expo 2012, held by HIMAFI IPB (Physics Student Society of IPB) , Bogor, 24 November 2012
  15. Sustainable Energy Education in USA,” What Can We Learn From Them ?”an invited /plenary talk at Seminar Nasional Sains ke V, Bogor Agricultural University, IPB Bogor, 10 November 2012.
  16. Pairing phenomena and problems in nature, How to solve them ?, Colloquium talk at Department of Physics and Engineering Frostburg State University, Nov 8th 2010.
  17. Superconductivity and pairing phenomena in condensed matter and beyond, talk at Armstrong Atlantic State University, May 7th 2008
  18. The effect of magnetic field to the pairing phase transitions of  mesoscopic systems, contributed talk at Division of Nuclear Physics, APS meeting, Newport News,  VA, Oct 10-13, 2007
  19. Pairing Correlations and Phase Transitions in Mesoscopic System, Ph.D dissertation’s defense at Department of Physics FSU, Oct 8th 2007
  20. Pairing phase transitions in the mesoscopic systems, talk at 19th National Nuclear Physics Summer School at FSU, July 8-21,  2007
  21. Thermalization and entropy in nuclear pairing phase transitions, talk at APS April meeting, Jacksonville FL, April 14-17, 2007
  22. Thermalization and entropy in nuclear pairing phase transitions, talk at FSU Nuclear Physics Seminar, Tallahassee FL, April 6th 2007
  23. Thermodynamics of pairing in mesoscopic nuclear system, talk at Division Nuclear Physics, APS meeting, Nashville TN, Oct 2006
  24. Thermodynamics of pairing in mesoscopic nuclear system, talk at FSU Nuclear Physics Seminar, Tallahassee FL, Oct 2006
  25. The role of pairing correlations to the structures and phases of neutron stars,  Prospectus defense at Dept.of Physics FSU, October 2005
  26. Pairing in neutron stars, talk at 17th National Nuclear Physics Summer School at University of California Berkeley, June 6-18,  2005

Honors/Awards and Grants

  1. Research Grant from Directorate of Higher Educations, Ministry of Education and Culture of The Republic of Indonesia to conduct research on; “Molecular Docking Studies of Curcumin and Its Analogs on Several Target Proteins for Anticancer drug design”, 2013
  1. Scholarships from The Sustainable Energy Fund to attend Sustainable Energy Conference and Wind Energy Boot camps in DeSalles University, PA, June 27th – July 1st 2011.
  1. Scholarships from The Sustainable Energy Fund to attend Sustainable Energy Conference and Solar PV Boot camps in Lehigh University, PA, July12th – July 16th 2010.
  1. Summer Grant from Faculty Development and Sabbatical Sub-Committee of Frostburg  State University to conduct research on : The effect of three-body forces to pairing correlations in mesoscopic systems .
  1.   Travel Award form COGS-FSU (Congress of Graduate studies at FSU) to attend The Division of Nuclear Physics (DNP) of American Physical       society (APS)  Meeting in Newport News VA, October 2007.
  1.   My paper in Phys.Rev C76 (Thermodynamics of pairing in mesoscopic systems) was selected in September 10th issue of Virtual Journal of Nanoscale Science and Technology.
  1. Graduate Student Travel Award from DNP of APS to attend the APS April Meeting 2007  in Jacksonville, FL.
  1.   Travel Award from COGS-FSU to attend the APS April Meeting 2007.
  2.   Travel Award from COGS-FSU to attend DNP APS Meeting, October 2006.
  3.  Travel award from National Nuclear Physics Summer School (NNPSS) Committee to attend XVII NNPSS at University of California at Berkeley, June 2005.

11  Graduate Studies Scholarship, from the Government of Republic of Indonesia to finish Master degree in Physics 1998-2000.

Professional Affiliation

  1. Member of Indonesian Physics Society (HFI)  2000 – now
  2. Member of American Physical Society (APS)  2004 – 2011
  3. Member of American Association of Physics Teacher (AAPT)  2009 – 2011
  4. Member of  Division of Nuclear Physics (DNP) of APS  2004 – 2011
  5. Member of  Division of Condensed Matter Physics (DCMP) of APS  2008 – 2009
  6. Member of  Ohio Section of American Physical Society (OSAPS)  2009 – 2011
  7. Member of Southeast Section of American Physical Society (SESAPS)  2005 – 2008